Last updated: 2024-11-02

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Knit directory: spatialsnippets/

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Rmd 9715a09 swbioinf 2024-11-02 wflow_publish("analysis/")
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Rmd 1749950 swbioinf 2024-11-02 wflow_publish("analysis/")
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Rmd 7c61fe8 swbioinf 2024-10-09 wflow_publish("analysis/")

Main repo: https://github.com/swbioinf/spatialsnippets

Contributions welcome! The goal is to develop this into a community resource.

Currently the main focus is on

  • In-situ single cell spatial technologies, or scRNAseq
  • Tests for comparing groups, rather than QC or preprocessing.
  • That that aren’t already covered in one place by a vignette ( e.g. No need to repeat the proportion tests in single cell data, since that’s exactly covered in the original propellar vignette)
  • Seurat - The only reason for this is familiarity!

Template for writing new test examples available here. And some preprocessed datasets are linked above (data isn’t hosted yet, but can be shared).

Any feedback on usability or statistics of these methods is gratefully received, and can be cited in the authorship of each page.