3 Schedule
This workshop delivered across two afternoons:
- 1:00pm - 4:30pm AEST Tuesday 28th July
- 1:00pm - 4:30pm AEST Wednesday 29th July
Trainers
- Sarah Williams (Lead trainer): QCIF Bioinformatics
- Frederick Jaya (Lead trainer): Sydney Informatics HUB (SIH)
- Adele Barugahare : Monash Genomics and Bioinformatics Platform (MGBP)
- Paul Harrison : Monash Genomics and Bioinformatics Platform (MGBP)
| Day 1 |
|---|
| Welcome and Housekeeping |
| Log in to VM |
| Background on ScRNAseq + R tools |
| Load data |
| QC filtering |
| Break |
| Normalisation |
| PCAs and UMAPs |
| Day 2 |
|---|
| Integration |
| Clustering |
| Cluster Markers |
| Break |
| SingleR |
| Differential Expression |
| Final remarks and conclusion |