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Intro to Spatial Transcriptomics
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Table of contents
1
Overview
2
Introduction
3
Background
4
Example Experiment
5
Aims for today
6
Input Data
7
QC
8
Basic visualisation
9
Reduce dimensionality - UMAPs
10
Batch Correction
11
Clustering
12
Clustering Labeling
13
Analysis example
14
Next steps
15
Resources
References
7
QC
Basic QC plots + filtering (20min)
(Negative probes if using cosmx)
6
Input Data
8
Basic visualisation
On this page
7
QC